Ignore Deleted Files Stopped Working For Some Series

Sonarr version (exact version):
Mono version (if Sonarr is not running on Windows):
OS: Ubuntu 16.04

Description of issue: I’ve noticed two different series are being redownloaded as soon as an episode was deleted. This is despite having Ignore Deleted Files turned on; which has always been on since day 1 of my install on this machine many years ago.

I’ve searched here and found some other people experienced this, but there was no clear resolution to the problem. This is wasting a lot of bandwidth, so I’d greatly appreciate any help!

Debug logs:
19-5-17 06:39:19.4|Info|ExistingMetadataImporter|Found 0 existing metadata files
19-5-17 06:39:19.4|Info|ExistingSubtitleImporter|Found 0 existing subtitle files
19-5-17 06:39:19.4|Info|ExistingOtherExtraImporter|Found 0 existing other extra files
19-5-17 06:39:19.4|Info|ExistingExtraFileService|Found 0 extra files
19-5-17 06:39:19.4|Info|RefreshSeriesService|Updating Info for The Magicians (2015)
19-5-17 06:39:19.5|Info|RefreshEpisodeService|Starting episode info refresh for: [299139][The Magicians (2015)]
19-5-17 06:39:19.7|Info|RefreshEpisodeService|Finished episode refresh for series: [299139][The Magicians (2015)].
19-5-17 06:39:19.7|Info|DiskScanService|Scanning disk for The Magicians (2015)
19-5-17 06:39:19.9|Info|DiskScanService|Completed scanning disk for The Magicians (2015)
19-5-17 06:39:19.9|Info|ExistingMetadataImporter|Found 0 existing metadata files
19-5-17 06:39:19.9|Info|ExistingSubtitleImporter|Found 0 existing subtitle files
19-5-17 06:39:19.9|Info|ExistingOtherExtraImporter|Found 0 existing other extra files
19-5-17 06:39:19.9|Info|ExistingExtraFileService|Found 0 extra files

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