After your last note I deleted all the shows and just re-added a few.
Things seemed to be fine and there were no more periodic scans of the root of the TV folder.
Then apparently on Saturday something happened.
I had a successful import on Thursday 10/15 at 4:26p:
Episode Imported
Name: Downton.Abbey.S06E03.720p.WEB-DL.AAC2.0.H.264-EsQ
Source: C:\Users\Niles\Documents\downloads\complete\tv\Downton.Abbey.S06E03.720p.WEB-DL.AAC2.0.H.264-EsQ\Downton.Abbey.S06E03.720p.WEB-DL.AAC2.0.H.264-EsQ.mkv
Imported To: F:\Television\Downton Abbey\Season 06\Downton Abbey s06e03 Episode 3 WEBDL-720p.mkv
Then the next item listed in the history is on Saturday 10/17 at 8:46p:
Episode Imported
Name: Downton.Abbey.S06E03.1080p.WEB-DL.AAC2.0.H.264-EsQ
Source: F:\Television\The Mindy Project\Season 01\The.Mindy.Project.S04E04.The.Bitch.is.Back.720p.HU.mkv
Imported To: F:\Television\Downton Abbey\Season 04\Downton Abbey s04e04 Episode 4 HDTV-720p.mkv
I have posted all the logs form my initial install until today to dropbox below:
Thanks again, Niles