Running Sonarr 2.0.0.3856 (develop branch) on OSX. Was running with uTorrent fine, renamed and deleted with no problems. I have changed to Transmission where I have selected a specific directory within Sonarr for the downloads. Transmission moves the files to this directory whilst seeding and Sonarr copies the video file to the TV directory and renames with no problems. However, once seeding has finished the downloaded files are just left, where (with uTorrent) Sonarr would tidy it up and delete them.
Nothing in debug logs (yet) to suggest why.
N.B. Default directory set in Transmission is NOT the same as what is set in Sonarr Transmission settings.
According to Transmission the only torrent being returned (Paw.Patrol.S03E03E04.Pups.Save.the.Soccer.Game.-.Pups.Save.a.Lucky.Collar.720p.NICK.WEBRip.AAC2.0.H.264-GoApe.mkv) hasn’t finished seeding: "isFinished":false,