Automating sonarr with Emby Media Server and encode

Sonarr version (exact version): 2.0.0.4472
Mono version (if Sonarr is not running on Windows):
OS: Windows 10 Pro
((Debug logs)):
(Make sure debug logging is enabled in settings and post the full log to hastebin/pastebin/dropbox/google drive or something similar, do not post them directly here)
Description of issue: I am new to sonarr and am trying to automate sonarr to do what I want it to do. What I want it to do, is to download new tv shows of my choosing, but I want to downmix the audio to 2 channel stereo DD(or to leave audio alone, if 2 channel is already detected), and to mux the new file with original video and subs and new encoded audio. Is this possible?

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