Restored Sonar - Epsidoes not updated

Sonarr version (exact version): Radarr.develop.0.2.0.846
OS: Windows Server 2016
((Debug logs)):
(Make sure debug logging is enabled in settings and post the full log to hastebin/pastebin/dropbox/google drive or something similar, do not post them directly here)
Description of issue:

1.) I had to reinstall Sonarr on a new machine, luckily I had a backup of 1 week ago; However, now there are episodes that Sonarr doesn’t show I have.
2.) When I download a new episode of a show, it isn’t getting put into the right folder for the show. it dumps it into the root directory.

1 - I made sure the Complete Download Mangement option was set.
I tried scanning the series, and doing an update library.

2 - I made sure all the series were monitored, use season folders, and resfresh.

Anyone have ideas? Thank you,

I may have found the issue, not sure…

The root path in Sonarr was still pointing to the old location.
Trying to update that now, probably take some time to know if it fixes it.

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