So, after installing Sonarr on Docker i am noticing, that sonarr does not make Seriesname/ Season folders… It just throws them in the main Series folder, therefore i have each episode as a folder now in my main series directory…
Sonarr will never do that. Sounds like your download client is putting them there and Sonarr is unable to import them, or they are seeding torrents and not deleted, as mentioned in the FAQ.